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How do new species arise, and how do the frequencies of traits in a population change over time?

Explain how reproductive isolation and natural selection can lead to speciation, and describe how the distribution of traits in a population changes as allele frequencies shift over generations (MA STE HS-LS4-3, HS-LS4-4, HS-LS4-5).

A standard-level answer on speciation and population genetics for the Massachusetts High School Biology MCAS: how reproductive isolation and natural selection produce new species, and how allele frequencies and trait distributions change over generations under HS-LS4.

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  1. What this topic is asking
  2. How new species form
  3. Evolution as changing allele frequencies
  4. The peppered moth: a worked example of changing frequencies
  5. Try this

What this topic is asking

The Massachusetts STE framework (HS-LS4-3, HS-LS4-4, HS-LS4-5) asks you to use evidence and reasoning to explain how the distribution of traits in a population changes and how new species arise. On the High School Biology MCAS, this is tested with scenarios: a population split by a barrier, or a changing environment that shifts which trait is favored. You explain how allele frequencies change and how isolation can lead to a new species. The crosscutting concept is stability and change, applied to populations over time.

How new species form

The most common route to a new species is:

  1. Isolation. A population is split into groups that can no longer interbreed, often by a geographic barrier (a new river, mountain, or stretch of sea). This is reproductive isolation.
  2. Divergence. The separated groups live in different environments with different selection pressures, so different traits are favored. Mutation adds new variation independently in each group.
  3. Speciation. Over many generations the groups become so genetically different that, even if reunited, they can no longer interbreed to produce fertile offspring. They are now separate species.

The test of whether two groups are separate species is exactly this inability to interbreed successfully, which the MCAS likes to ask about. This process explains the biodiversity you meet in biodiversity and classification.

Evolution as changing allele frequencies

At the level of a population, evolution is a change in allele frequencies over generations. Recall from patterns of inheritance that an allele is a version of a gene. In a population, you can think about the proportion (frequency) of each allele:

  • If a selection pressure favors a trait, individuals with the allele for that trait survive and reproduce more, so the allele becomes more common (its frequency rises).
  • Alleles that are disadvantageous become less common (their frequency falls).

So when the environment changes, the distribution of traits in the population shifts as the allele frequencies change. This is the same natural selection from natural selection, now described in terms of allele proportions.

The peppered moth: a worked example of changing frequencies

The peppered moth is the classic case. Originally most moths were light, camouflaged against pale tree bark. When pollution darkened the bark, dark moths became better camouflaged, so they survived predators better, reproduced more, and passed on the dark allele, whose frequency rose. When pollution was later reduced and the bark lightened again, the light allele became favored once more and rose in frequency. The moth population evolved in step with its environment, showing that allele frequencies track the selection pressure.

Try this

Q1. State what must happen for two populations to become separate species. [2]

  • Cue. They must become so genetically different (after reproductive isolation and divergence) that they can no longer interbreed to produce fertile offspring.

Q2. Explain what happens to the frequency of an allele when the trait it codes for becomes advantageous. [2]

  • Cue. Individuals with the allele survive and reproduce more, so they pass it on, and the allele becomes more common (its frequency rises) over generations.

Exam-style practice questions

Practice questions written in the style of MA DESE exam questions on this dot point, with worked answer explainers. The year tag is the paper they imitate, not the source.

HS Biology MCAS (style)3 marksA river changes course and splits one population of lizards into two groups that can no longer meet. (a) State the term for the two groups being unable to interbreed. (b) Explain how this could lead to two separate species over a long time. (c) State what would confirm they had become separate species.
Show worked answer →

A 3-point item on cause and effect.

(a) 1 point: reproductive isolation (geographic isolation).
(b) 1 point: the two groups face different environments and different selection pressures, so different traits are favored; over many generations natural selection and mutation make the groups more and more genetically different.
(c) 1 point: they would be confirmed as separate species when they can no longer interbreed to produce fertile offspring even if brought back together. Markers reward the inability to interbreed as the test of a new species.

HS Biology MCAS (style)3 marksIn a moth population, a pollution event darkens tree bark. (a) Explain what happens to the frequency of the dark-color allele over time. (b) Explain why this is described as a change in the population's genetics. (c) Explain what would happen to the allele frequency if the pollution were later cleaned up.
Show worked answer →

A 3-point item on stability and change with the practice of analyzing data.

(a) 1 point: dark moths are now better camouflaged, survive and reproduce more, and pass on the dark allele, so the frequency of the dark allele increases.
(b) 1 point: the proportions of alleles in the whole population change over generations, which is what evolution at the population level means.
(c) 1 point: with light bark again, light moths would be better camouflaged, so the light allele would increase and the dark allele would decrease again. Markers reward linking allele frequency to the selection pressure.

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